Fantastic, if you're still here im assuming you're fine with it, so currently I have set up the three intro missions to introduce some bigger plots;
Heat Signature, is the start of an alien invasion, they give their own super powers, but can retain the powers of other supers, known as Parasites, I am thinking about using some of our now gone players for these story lines later.
Guard Duty, there is a larger group / organization attempting to train regular people to go toe to toe with supers, think kind of Illuminati, league of Assassins, or knight templar, but eventually the idea is they will be attempting to control or discredit the supers in some way.
Danger room this is a machine meant to eventually over come man kind, definitely age of ultron feel to it, or the sentinels, made to protect humanity, it will decide that humanity is more of a danger to itself then anything else, and attempt to create its own nation, and then decides supers are the next biggest issue with humanity, and decides to remove them. This is meant to be the most immediate concern, but will go long term as well.
Now I would love some filler to add in, and any help you guys can give to the big story lines as well.